GWL_35760 protein (Herbaspirillum sp. GW103)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

GWL_35760

Transmembrane protein. (76 aa)

Predicted Functional Partners:

GWL_35770

0.859

GWL_35720

0.763

GWL_35920

0.763

GWL_35800

0.756

GWL_42440

0.747

GWL_35790

0.700

GWL_42430

0.682

GWL_35750

0.671

GWL_10750

0.616

GWL_35740

0.613

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GWL_10750	GWL_35760	Transmembrane protein; Overlaps another CDS with the same product name.	Transmembrane protein.	0.616
GWL_10750	GWL_35920	Transmembrane protein; Overlaps another CDS with the same product name.	Hypothetical protein.	0.550
GWL_10750	GWL_42430	Transmembrane protein; Overlaps another CDS with the same product name.	Hypothetical protein.	0.560
GWL_10750	GWL_42440	Transmembrane protein; Overlaps another CDS with the same product name.	Transmembrane protein.	0.678
GWL_35720	GWL_35740	Transmembrane protein.	Transmembrane protein.	0.922
GWL_35720	GWL_35750	Transmembrane protein.	Cytochrome c oxidase subunit III transmembrane protein.	0.773
GWL_35720	GWL_35760	Transmembrane protein.	Transmembrane protein.	0.763
GWL_35720	GWL_35770	Transmembrane protein.	Cytochrome C oxidase assembly transmembrane protein.	0.928
GWL_35720	GWL_35790	Transmembrane protein.	Cytochrome c oxidase polypeptide II precursor transmembrane protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.971
GWL_35720	GWL_35800	Transmembrane protein.	Integral membrane protein.	0.534
GWL_35720	GWL_35920	Transmembrane protein.	Hypothetical protein.	0.488
GWL_35720	GWL_42440	Transmembrane protein.	Transmembrane protein.	0.549
GWL_35740	GWL_35720	Transmembrane protein.	Transmembrane protein.	0.922
GWL_35740	GWL_35750	Transmembrane protein.	Cytochrome c oxidase subunit III transmembrane protein.	0.645
GWL_35740	GWL_35760	Transmembrane protein.	Transmembrane protein.	0.613
GWL_35740	GWL_35770	Transmembrane protein.	Cytochrome C oxidase assembly transmembrane protein.	0.453
GWL_35740	GWL_35790	Transmembrane protein.	Cytochrome c oxidase polypeptide II precursor transmembrane protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.623
GWL_35740	GWL_42440	Transmembrane protein.	Transmembrane protein.	0.439
GWL_35750	GWL_35720	Cytochrome c oxidase subunit III transmembrane protein.	Transmembrane protein.	0.773
GWL_35750	GWL_35740	Cytochrome c oxidase subunit III transmembrane protein.	Transmembrane protein.	0.645