Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_36030Hypothetical protein. (223 aa)    
Predicted Functional Partners:
GWL_36040
Fimbrial type-4 assembly signal peptide protein.
  
 
 0.985
GWL_36020
Hypothetical protein.
  
  
 0.971
GWL_36000
Hypothetical protein.
  
  
 0.879
GWL_36010
Hypothetical protein.
       0.773
aroB
3-dehydroquinate synthase/shikimate kinase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
  
    0.665
GWL_35980
Penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein.
       0.593
GWL_35990
Hypothetical protein.
       0.568
GWL_36060
Deoxyguanosinetriphosphate triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
       0.509
GWL_33030
Glutamate synthase large subunit oxidoreductase.
       0.426
GWL_45010
Leader peptidase/N-methyltransferase transmembrane protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
     
 0.416
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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