Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_36240Type III effector HopAN1 protein. (428 aa)    
Predicted Functional Partners:
GWL_36230
Class II aldolase/adducin domain-containing protein.
  
 0.987
GWL_36250
6-phosphogluconate dehydrogenase.
 
  
 0.908
GWL_36210
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.756
GWL_24040
Nucleoside-diphosphate-sugar epimerase.
 
   
 0.755
GWL_03780
UDP-glucose 4-epimerase.
 
   
 0.608
GWL_26390
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.594
GWL_07720
Hypothetical protein.
 
   
 0.593
GWL_07690
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
     0.446
GWL_36220
Major facilitator superfamily permease.
       0.435
GWL_07730
Ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
 
   
 0.429
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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