Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_36400Cytosine/purine/uracil/thiamine/allantoin permease family protein. (483 aa)    
Predicted Functional Partners:
GWL_36410
Hydantoin racemase.
 
     0.898
GWL_26290
Xanthine permease.
 
  
 0.633
GWL_08820
Dihydropyrimidinase.
 
  
 0.628
GWL_31330
Dihydropyrimidinase.
 
  
 0.625
GWL_36420
Xylanase/chitin deacetylase.
 
     0.615
GWL_44490
Hypothetical protein.
 
     0.561
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
    
 
 0.546
GWL_29860
Xanthine/uracil permease.
  
  
 0.479
GWL_36390
Transcription regulator protein.
       0.457
GWL_46290
Dihydroorotase.
  
  
 0.430
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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