Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_36860Signal peptide protein. (273 aa)    
Predicted Functional Partners:
GWL_36890
Transmembrane protein.
 
     0.747
GWL_36880
Biotin operon repressor/biotin-[acetyl-CoA- carboxylase] synthetase.
       0.733
coaX
Transcription regulation accessory factor transcription regulator protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
     
 0.732
GWL_15930
Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.721
GWL_26850
Transmembrane Tfp pilus assembly FimV protein.
  
     0.720
GWL_07010
Hypothetical protein.
  
     0.702
GWL_07040
SMC domain-containing protein.
  
     0.696
GWL_08360
Transmembrane protein.
  
     0.675
GWL_32130
Twitching motility protein.
  
     0.667
GWL_07030
Hypothetical protein.
  
     0.660
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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