Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_36910Alpha/beta superfamily hydrolase. (220 aa)    
Predicted Functional Partners:
GWL_36900
Ferredoxin [2Fe-2S]-type protein.
       0.720
GWL_36920
D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein; Belongs to the peptidase S11 family.
 
     0.689
GWL_36890
Transmembrane protein.
 
     0.679
GWL_42670
Glutamate-cysteine ligase.
  
     0.572
coaX
Transcription regulation accessory factor transcription regulator protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
 
     0.552
GWL_36880
Biotin operon repressor/biotin-[acetyl-CoA- carboxylase] synthetase.
       0.495
GWL_00960
Inner membrane protein.
 
     0.476
GWL_40470
Hypothetical protein.
  
    0.467
GWL_09660
tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.447
GWL_26650
tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.447
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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