Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_37100Flavoprotein oxidoreductase. (438 aa)    
Predicted Functional Partners:
slyX
SlyX protein; Belongs to the SlyX family.
 
     0.822
GWL_37090
Amino acid ABC transporter permease.
       0.644
dinB
nucleotidyltransferase/DNA polymerase involved in DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.642
GWL_04350
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
     
  0.492
GWL_07260
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein.
     
  0.492
GWL_33740
Vanillate O-demethylase (vanillate degradation ferredoxin-like) oxidoreductase.
     
  0.492
GWL_35480
Phenylacetic acid degradation NADH oxidoreductase.
     
  0.492
GWL_46180
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein.
     
  0.492
GWL_37080
Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.
       0.438
GWL_00360
Lactoylglutathione lyase-related protein.
  
    0.414
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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