slyX protein (Herbaspirillum sp. GW103) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

slyX

SlyX protein; Belongs to the SlyX family. (69 aa)

Predicted Functional Partners:

GWL_37100

0.822

dinB

0.642

GWL_37090

0.639

GWL_32830

0.556

GWL_43730

0.467

GWL_37080

0.438

GWL_36770

0.411

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_32830	slyX	GWL_32830	GWL_37110	Diadenosine tetraphosphate (Ap4A) hydrolase.	SlyX protein; Belongs to the SlyX family.	0.556
GWL_36770	slyX	GWL_36770	GWL_37110	Hypothetical protein.	SlyX protein; Belongs to the SlyX family.	0.411
GWL_37080	GWL_37090	GWL_37080	GWL_37090	Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter permease.	0.973
GWL_37080	GWL_37100	GWL_37080	GWL_37100	Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.	Flavoprotein oxidoreductase.	0.438
GWL_37080	slyX	GWL_37080	GWL_37110	Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.	SlyX protein; Belongs to the SlyX family.	0.438
GWL_37090	GWL_37080	GWL_37090	GWL_37080	Amino acid ABC transporter permease.	Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.	0.973
GWL_37090	GWL_37100	GWL_37090	GWL_37100	Amino acid ABC transporter permease.	Flavoprotein oxidoreductase.	0.644
GWL_37090	dinB	GWL_37090	GWL_37120	Amino acid ABC transporter permease.	nucleotidyltransferase/DNA polymerase involved in DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	0.536
GWL_37090	slyX	GWL_37090	GWL_37110	Amino acid ABC transporter permease.	SlyX protein; Belongs to the SlyX family.	0.639
GWL_37100	GWL_37080	GWL_37100	GWL_37080	Flavoprotein oxidoreductase.	Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.	0.438
GWL_37100	GWL_37090	GWL_37100	GWL_37090	Flavoprotein oxidoreductase.	Amino acid ABC transporter permease.	0.644
GWL_37100	dinB	GWL_37100	GWL_37120	Flavoprotein oxidoreductase.	nucleotidyltransferase/DNA polymerase involved in DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	0.642
GWL_37100	slyX	GWL_37100	GWL_37110	Flavoprotein oxidoreductase.	SlyX protein; Belongs to the SlyX family.	0.822
GWL_43730	slyX	GWL_43730	GWL_37110	TPR repeat, SEL1 subfamily protein.	SlyX protein; Belongs to the SlyX family.	0.467
dinB	GWL_37090	GWL_37120	GWL_37090	nucleotidyltransferase/DNA polymerase involved in DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Amino acid ABC transporter permease.	0.536
dinB	GWL_37100	GWL_37120	GWL_37100	nucleotidyltransferase/DNA polymerase involved in DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Flavoprotein oxidoreductase.	0.642
dinB	slyX	GWL_37120	GWL_37110	nucleotidyltransferase/DNA polymerase involved in DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	SlyX protein; Belongs to the SlyX family.	0.642
slyX	GWL_32830	GWL_37110	GWL_32830	SlyX protein; Belongs to the SlyX family.	Diadenosine tetraphosphate (Ap4A) hydrolase.	0.556
slyX	GWL_36770	GWL_37110	GWL_36770	SlyX protein; Belongs to the SlyX family.	Hypothetical protein.	0.411
slyX	GWL_37080	GWL_37110	GWL_37080	SlyX protein; Belongs to the SlyX family.	Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.	0.438