Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_37690Periplasmic trypsin-like serine endoprotease; Belongs to the peptidase S1C family. (494 aa)    
Predicted Functional Partners:
GWL_14980
TPR repeat containing protein.
  
 0.944
GWL_13750
Periplasmic trypsin-like serine protease; Belongs to the peptidase S1C family.
     
  0.876
GWL_20640
Ankyrin repeat-containing signal peptide protein.
   
 0.870
GWL_05470
Serine proteinase.
  
  
 
0.867
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.859
GWL_20840
Glycerol kinase; Belongs to the FGGY kinase family.
   
 0.859
GWL_13730
Transmembrane sigma-E factor negative regulatory transcription regulator protein.
  
 
 0.833
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.798
rplY
Large subunit ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.721
GWL_19250
Signal peptidase I (SPase I) family protein; Belongs to the peptidase S26 family.
    
 0.700
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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