GWL_38220 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_38220

Demethylmenaquinone methyltransferase. (229 aa)

Predicted Functional Partners:

GWL_11680

0.876

GWL_11690

0.876

GWL_38250

0.852

GWL_38210

0.821

GWL_38200

0.784

prpB

0.759

GWL_22210

0.728

GWL_23210

0.728

GWL_38230

0.713

GWL_08970

0.694

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_08970	GWL_11680	GWL_08970	GWL_11680	Hypothetical protein; Belongs to the TPP enzyme family.	Acetolactate synthase isozyme III large subunit.	0.860
GWL_08970	GWL_11690	GWL_08970	GWL_11690	Hypothetical protein; Belongs to the TPP enzyme family.	Acetolactate synthase isozyme III small regulatory subunit.	0.991
GWL_08970	GWL_38220	GWL_08970	GWL_38220	Hypothetical protein; Belongs to the TPP enzyme family.	Demethylmenaquinone methyltransferase.	0.694
GWL_08970	prpB	GWL_08970	GWL_24680	Hypothetical protein; Belongs to the TPP enzyme family.	Carboxyphosphonoenolpyruvate phosphonomutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.	0.655
GWL_11680	GWL_08970	GWL_11680	GWL_08970	Acetolactate synthase isozyme III large subunit.	Hypothetical protein; Belongs to the TPP enzyme family.	0.860
GWL_11680	GWL_11690	GWL_11680	GWL_11690	Acetolactate synthase isozyme III large subunit.	Acetolactate synthase isozyme III small regulatory subunit.	0.999
GWL_11680	GWL_38220	GWL_11680	GWL_38220	Acetolactate synthase isozyme III large subunit.	Demethylmenaquinone methyltransferase.	0.876
GWL_11680	prpB	GWL_11680	GWL_24680	Acetolactate synthase isozyme III large subunit.	Carboxyphosphonoenolpyruvate phosphonomutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.	0.655
GWL_11690	GWL_08970	GWL_11690	GWL_08970	Acetolactate synthase isozyme III small regulatory subunit.	Hypothetical protein; Belongs to the TPP enzyme family.	0.991
GWL_11690	GWL_11680	GWL_11690	GWL_11680	Acetolactate synthase isozyme III small regulatory subunit.	Acetolactate synthase isozyme III large subunit.	0.999
GWL_11690	GWL_22210	GWL_11690	GWL_22210	Acetolactate synthase isozyme III small regulatory subunit.	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	0.702
GWL_11690	GWL_23210	GWL_11690	GWL_23210	Acetolactate synthase isozyme III small regulatory subunit.	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	0.702
GWL_11690	GWL_38210	GWL_11690	GWL_38210	Acetolactate synthase isozyme III small regulatory subunit.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.602
GWL_11690	GWL_38220	GWL_11690	GWL_38220	Acetolactate synthase isozyme III small regulatory subunit.	Demethylmenaquinone methyltransferase.	0.876
GWL_11690	prpB	GWL_11690	GWL_24680	Acetolactate synthase isozyme III small regulatory subunit.	Carboxyphosphonoenolpyruvate phosphonomutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.	0.780
GWL_22210	GWL_11690	GWL_22210	GWL_11690	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	Acetolactate synthase isozyme III small regulatory subunit.	0.702
GWL_22210	GWL_23210	GWL_22210	GWL_23210	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	0.876
GWL_22210	GWL_38220	GWL_22210	GWL_38220	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	Demethylmenaquinone methyltransferase.	0.728
GWL_22210	prpB	GWL_22210	GWL_24680	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	Carboxyphosphonoenolpyruvate phosphonomutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.	0.421
GWL_23210	GWL_11690	GWL_23210	GWL_11690	Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.	Acetolactate synthase isozyme III small regulatory subunit.	0.702