Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_38230Gluconolactonase. (306 aa)    
Predicted Functional Partners:
GWL_11210
Gluconolactonase.
  
  
 
0.909
GWL_04580
Gluconokinase; Belongs to the FGGY kinase family.
  
 
 0.886
GWL_09510
D-isomer specific 2-hydroxyacid dehydrogenase.
  
 
 0.883
GWL_10690
Dehydrogenase oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.883
GWL_27520
Choline dehydrogenase.
  
 
 0.883
GWL_27530
Hypothetical protein.
     
 0.879
GWL_39190
Choline dehydrogenase-like protein.
  
 
 0.825
GWL_39180
Hypothetical protein.
     
 0.819
GWL_38250
Amidohydrolase 2.
 
     0.810
GWL_38210
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.795
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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