Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_38280Nitrate response regulator protein. (419 aa)    
Predicted Functional Partners:
GWL_22510
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
  
 0.674
GWL_22520
Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.655
GWL_40880
Urea ABC transporter periplasmic protein.
 
 
 0.646
GWL_20970
Branched-chain amino acid ABC transporter periplasmic protein.
 
 
 0.634
GWL_24500
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.629
GWL_30540
30s ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.610
GWL_06070
Nitrate transporter periplasmic protein.
 
  
 0.586
GWL_10660
Branched-chain amino acid ABC transporter periplasmic protein.
  
 
 0.586
GWL_12240
Branched-chain amino acid ABC transporter periplasmic protein.
  
 
 0.586
GWL_18880
Branched-chain amino acid ABC transporter periplasmic protein.
  
 
 0.586
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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