Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_38400Gluconate dehydrogenase. (593 aa)    
Predicted Functional Partners:
GWL_38390
Hypothetical protein.
 0.979
GWL_38410
Cytochrome c precursor protein.
 
 
   0.963
GWL_27530
Hypothetical protein.
 0.946
GWL_39180
Hypothetical protein.
 
 0.943
GWL_27510
Cytochrome c precursor protein.
 
 
   0.884
GWL_39200
Membrane-bound D-gluconate 2-dehydrogenase cytochrome c subunit.
 
 
   0.883
GWL_20640
Ankyrin repeat-containing signal peptide protein.
    
 0.862
GWL_18660
Cytochrome c family protein.
 
 
 
 0.838
GWL_07920
Cytochrome c protein.
 
 
   0.835
GWL_19120
Hypothetical protein.
    
 0.805
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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