Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_38680Outer membrane protein. (349 aa)    
Predicted Functional Partners:
GWL_37360
Methionine synthase I, cobalamin-binding domain-containing protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.954
GWL_03400
Cysteine synthase B protein; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.835
GWL_42270
Threonine dehydratase.
     
  0.788
GWL_00790
Methionine synthase II protein.
 
  
 0.782
GWL_15190
Homoserine dehydrogenase.
     
 0.766
GWL_12560
Histidine-containing phosphotransfer (HPt) domain-containing protein.
    
 0.733
GWL_24770
Sensor histidine kinase.
    
 0.733
GWL_31040
Two component hybrid sensor histidine kinase/response regulator protein.
    
 0.733
GWL_27960
Two component hybrid sensor histidine kinase/response regulator protein.
    
 0.731
GWL_30960
Hypothetical protein.
    
 0.730
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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