Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_38980Tricarboxylic acid transport protein. (323 aa)    
Predicted Functional Partners:
GWL_27410
Transmembrane protein.
 
  
 0.939
GWL_17960
Twin-arginine translocation pathway signal protein.
  
  
 
0.793
GWL_27430
Hypothetical protein.
  
  
 
0.793
GWL_27420
Hypothetical protein.
 
  
 0.784
GWL_38970
Fe3+ ABC transporter periplasmic protein.
 
     0.661
GWL_39010
Two component sensor histidine kinase.
 
   
 0.555
GWL_38990
Hypothetical protein.
       0.545
GWL_39000
Two component transcription regulator protein.
       0.463
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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