Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_39320Ornithine cyclodeaminase. (306 aa)    
Predicted Functional Partners:
GWL_43550
Proline racemase; Belongs to the proline racemase family.
 
  
 0.906
GWL_43560
Ornithine cyclodeaminase.
  
  
  0.899
GWL_43670
Proline dehydrogenase/proline oxidase delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.872
GWL_42310
Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.
 
  
 0.853
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.818
GWL_03400
Cysteine synthase B protein; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.779
GWL_05430
NADP-dependent malic enzyme oxidoreductase.
     
 0.728
GWL_27720
NADP-dependent malic enzyme oxidoreductase.
     
 0.728
GWL_39330
LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.668
GWL_11480
Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.
 
  
 0.642
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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