Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_39330LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
GWL_39320
Ornithine cyclodeaminase.
       0.668
GWL_08790
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.648
GWL_31660
LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.633
GWL_38420
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.604
GWL_03170
LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.549
GWL_05170
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.549
GWL_27180
LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.532
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.522
GWL_22260
LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.521
GWL_38260
LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.512
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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