Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_39540Major facilitator superfamily permease. (413 aa)    
Predicted Functional Partners:
GWL_39530
Metal-dependent transmembrane hydrolase.
 
     0.833
GWL_03350
Fosmidomycin resistance protein.
  
  
 0.432
GWL_39520
Membrane-associated, metal-dependent hydrolase.
     
 0.430
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
     
 0.430
GWL_18960
Major facilitator superfamily permease.
  
  
  0.409
GWL_07710
Major facilitator superfamily MFS_1.
  
  
 0.408
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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