GWL_40410 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_40410

SMF protein involved in DNA uptake protein. (442 aa)

Predicted Functional Partners:

GWL_35820

0.918

GWL_21960

0.915

GWL_45010

0.877

GWL_42460

0.872

GWL_42610

0.865

recA

0.820

GWL_33410

0.716

GWL_40320

0.685

smg

0.684

GWL_41540

0.671

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_21960	GWL_33410	GWL_21960	GWL_33410	Transporter DNA uptake transmembrane protein.	Single-strand DNA-binding protein (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.	0.585
GWL_21960	GWL_35820	GWL_21960	GWL_35820	Transporter DNA uptake transmembrane protein.	Amidophosphoribosyltransferase.	0.868
GWL_21960	GWL_40320	GWL_21960	GWL_40320	Transporter DNA uptake transmembrane protein.	Holliday junction resolvase-like protein; Belongs to the UPF0102 family.	0.444
GWL_21960	GWL_40410	GWL_21960	GWL_40410	Transporter DNA uptake transmembrane protein.	SMF protein involved in DNA uptake protein.	0.915
GWL_21960	GWL_41540	GWL_21960	GWL_41540	Transporter DNA uptake transmembrane protein.	Amidophosphoribosyltransferase.	0.725
GWL_21960	GWL_42460	GWL_21960	GWL_42460	Transporter DNA uptake transmembrane protein.	Mg(2+) chelatase family protein.	0.595
GWL_21960	GWL_42610	GWL_21960	GWL_42610	Transporter DNA uptake transmembrane protein.	Mg(2+) chelatase family protein.	0.610
GWL_21960	GWL_45010	GWL_21960	GWL_45010	Transporter DNA uptake transmembrane protein.	Leader peptidase/N-methyltransferase transmembrane protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.864
GWL_21960	recA	GWL_21960	GWL_01640	Transporter DNA uptake transmembrane protein.	Recombinase A protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.673
GWL_33410	GWL_21960	GWL_33410	GWL_21960	Single-strand DNA-binding protein (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.	Transporter DNA uptake transmembrane protein.	0.585
GWL_33410	GWL_35820	GWL_33410	GWL_35820	Single-strand DNA-binding protein (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.	Amidophosphoribosyltransferase.	0.589
GWL_33410	GWL_40410	GWL_33410	GWL_40410	Single-strand DNA-binding protein (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.	SMF protein involved in DNA uptake protein.	0.716
GWL_33410	GWL_41540	GWL_33410	GWL_41540	Single-strand DNA-binding protein (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.	Amidophosphoribosyltransferase.	0.473
GWL_33410	recA	GWL_33410	GWL_01640	Single-strand DNA-binding protein (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.	Recombinase A protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.522
GWL_35820	GWL_21960	GWL_35820	GWL_21960	Amidophosphoribosyltransferase.	Transporter DNA uptake transmembrane protein.	0.868
GWL_35820	GWL_33410	GWL_35820	GWL_33410	Amidophosphoribosyltransferase.	Single-strand DNA-binding protein (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.	0.589
GWL_35820	GWL_40320	GWL_35820	GWL_40320	Amidophosphoribosyltransferase.	Holliday junction resolvase-like protein; Belongs to the UPF0102 family.	0.731
GWL_35820	GWL_40410	GWL_35820	GWL_40410	Amidophosphoribosyltransferase.	SMF protein involved in DNA uptake protein.	0.918
GWL_35820	GWL_42460	GWL_35820	GWL_42460	Amidophosphoribosyltransferase.	Mg(2+) chelatase family protein.	0.831
GWL_35820	GWL_42610	GWL_35820	GWL_42610	Amidophosphoribosyltransferase.	Mg(2+) chelatase family protein.	0.822