Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_404602-hydroxychromene-2-carboxylate isomerase. (200 aa)    
Predicted Functional Partners:
GWL_40470
Hypothetical protein.
       0.794
GWL_40450
isovaleryl-CoA dehydrogenase.
       0.645
GWL_40500
Beta-lactamase.
  
    0.606
GWL_07690
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
     
 0.590
GWL_08800
Hypothetical protein; Belongs to the DapA family.
     
 0.590
GWL_40480
acetyl/propionyl-CoA carboxylase subunit beta.
       0.577
GWL_40490
acetyl/propionyl-CoA carboxylase subunit alpha.
       0.529
GWL_40430
Zn-dependent hydrolase.
 
     0.465
GWL_40440
Transcription regulator protein.
       0.450
GWL_40510
Hypothetical protein.
       0.441
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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