Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_40500Beta-lactamase. (309 aa)    
Predicted Functional Partners:
GWL_40490
acetyl/propionyl-CoA carboxylase subunit alpha.
     
 0.775
GWL_43420
Transmembrane protein.
  
 0.756
dnaQ
DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
    
 0.713
GWL_40480
acetyl/propionyl-CoA carboxylase subunit beta.
  
    0.713
GWL_02210
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
  
 0.682
GWL_24660
Signal peptide protein.
  
     0.676
GWL_05540
Transmembrane protein.
  
 0.666
GWL_00070
Rhodanese-related sulfurtransferase.
  
 0.658
GWL_18080
Putative mercuric transport protein.
  
 0.658
GWL_24760
Rhodanese-related sulfurtransferase.
  
 0.658
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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