Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_40650Cyclic nucleotide-binding protein. (224 aa)    
Predicted Functional Partners:
GWL_44510
Adenylate cyclase.
  
 0.951
GWL_33030
Glutamate synthase large subunit oxidoreductase.
    
 0.929
GWL_08760
2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase.
   
 0.820
GWL_17820
Dihydrolipoamide dehydrogenase.
   
 0.820
GWL_20360
Cyclic nucleotide-binding protein.
     
  0.813
GWL_27960
Two component hybrid sensor histidine kinase/response regulator protein.
   
 0.813
GWL_19410
Two component hybrid sensor histidine kinase/response regulator protein.
   
 0.769
GWL_43670
Proline dehydrogenase/proline oxidase delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.767
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.759
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.756
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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