Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_41460Choline dehydrogenase. (543 aa)    
Predicted Functional Partners:
GWL_20640
Ankyrin repeat-containing signal peptide protein.
    
 0.862
GWL_41470
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.836
GWL_19120
Hypothetical protein.
    
 0.805
GWL_14980
TPR repeat containing protein.
   
 0.760
GWL_06940
Cyclic di-GMP binding protein WssC; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
    
  0.748
GWL_11810
Methyltransferase.
    
  0.748
GWL_23610
Methyltransferase of chemotaxis protein.
    
  0.748
GWL_23850
TPR repeat containing protein.
    
  0.748
GWL_26140
Methyltransferase.
    
  0.748
GWL_29340
TPR repeat-containing protein.
    
  0.748
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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