Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_42390Two component response regulator protein. (249 aa)    
Predicted Functional Partners:
GWL_42400
Two component sensor histidine kinase.
 
 0.993
GWL_30960
Hypothetical protein.
 
 0.904
GWL_24770
Sensor histidine kinase.
 
 0.895
GWL_24730
Nitrogen regulation (sensor histidine kinase) transcription regulator protein.
 
 0.894
GWL_31040
Two component hybrid sensor histidine kinase/response regulator protein.
 
 0.885
GWL_17210
PAS/PAC sensor hybrid histidine kinase response regulator protein.
 
 0.884
GWL_42410
Proline rich signal peptide protein.
 
     0.874
GWL_27960
Two component hybrid sensor histidine kinase/response regulator protein.
  
 0.870
GWL_02530
C4-dicarboxylate transport sensor histidine kinase.
 
 
 0.867
GWL_12560
Histidine-containing phosphotransfer (HPt) domain-containing protein.
  
 0.856
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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