Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_42440Transmembrane protein. (175 aa)    
Predicted Functional Partners:
GWL_42430
Hypothetical protein.
 
     0.882
GWL_35760
Transmembrane protein.
  
     0.747
GWL_42370
Hypothetical protein.
  
     0.744
GWL_09550
Transmembrane protein.
  
     0.721
GWL_35920
Hypothetical protein.
  
     0.715
GWL_35950
Hypothetical protein.
  
     0.684
GWL_10750
Transmembrane protein; Overlaps another CDS with the same product name.
  
     0.678
GWL_38930
Transmembrane outer membrane porin signal peptide protein.
  
     0.665
GWL_35940
Prolin-rich signal peptide protein.
  
     0.637
GWL_13610
Fe-S protein.
  
     0.625
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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