Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_432504-hydroxybutyrate dehydrogenase. (379 aa)    
Predicted Functional Partners:
GWL_03220
Alcohol dehydrogenase.
  
 0.947
GWL_04430
NADP-dependent succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.915
GWL_08550
NAD-dependent aldehyde dehydrogenase.
  
 0.915
GWL_04480
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.885
GWL_04990
NADP-dependent succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.872
GWL_33030
Glutamate synthase large subunit oxidoreductase.
   
 
 0.853
GWL_06270
Alcohol dehydrogenase superfamily, zinc-containing:Alcohol dehydrogenase, zinc-containing.
    
 0.830
GWL_21740
Glutathione-dependent formaldehyde dehydrogenase/alcohol dehydrogenase class III oxidoreductase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.830
GWL_22200
Zinc-type alcohol dehydrogenase transmembrane protein.
    
 0.830
GWL_35400
Ring-opening enzyme protein.
  
 0.827
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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