Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_43330Cytochrome C-type biogenesis transmembrane protein. (721 aa)    
Predicted Functional Partners:
GWL_43340
ABC transporter permease.
 
  
 0.992
GWL_12190
Transmembrane protein.
  
     0.774
GWL_40350
Thioredoxin protein.
 
  
 0.758
GWL_32840
Oxidoreductase.
  
     0.629
GWL_24500
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
    0.566
GWL_43320
Cytochrome c553 protein.
     
 0.564
GWL_09620
Hypothetical protein.
  
     0.539
GWL_26990
Transmembrane protein.
  
     0.532
GWL_30480
DNA uptake protein.
  
     0.502
atpA
F0F1-type ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
  
 0.498
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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