Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
GWL_43720Outer membrane protein (porin) signal peptide protein. (391 aa)    
Predicted Functional Partners:
GWL_38930
Transmembrane outer membrane porin signal peptide protein.
  
  
 
0.896
GWL_31220
Porin signal peptide protein.
  
  
 
0.854
GWL_33860
Porin transmembrane protein.
  
  
 
0.850
GWL_14190
Periplasmic polysaccharide export protein.
     
 0.847
GWL_04030
Outer membrane porin.
  
  
 
0.828
GWL_03590
Porin signal peptide protein.
     
  0.757
GWL_26620
Transmembrane lipoprotein.
  
   
 0.733
GWL_46100
Membrane protein.
  
     0.729
GWL_02670
undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.
  
     0.720
GWL_32630
Signal peptide protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
 
 0.715
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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