Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_43960Transcription regulator protein. (235 aa)    
Predicted Functional Partners:
GWL_43970
acyl-CoA dehydrogenase.
     
 0.759
GWL_05740
Hypothetical protein.
  
     0.664
GWL_42370
Hypothetical protein.
  
     0.636
GWL_43980
3-hydroxyacyl-CoA dehydrogenase oxidoreductase.
 
  
 0.600
GWL_35940
Prolin-rich signal peptide protein.
  
     0.550
GWL_42440
Transmembrane protein.
  
     0.523
GWL_09550
Transmembrane protein.
  
     0.513
ftsZ
Cell division GTPase; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
    
 
 0.481
GWL_11620
Lipase transmembrane protein.
  
   
 0.477
GWL_19060
Transmembrane protein.
  
     0.467
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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