Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
GWL_44060glycine/D-amino acid oxidase. (424 aa)    
Predicted Functional Partners:
GWL_45120
BFD-like protein (2Fe-2S)-binding protein.
 
 
 0.909
GWL_38490
BFD-like protein.
 
 
 0.886
GWL_44050
Hypothetical Protein.
 
  
  0.886
GWL_04980
GNAT family acetyltransferase.
  
  
  0.824
GWL_05040
HAD superfamily haloalkanoic acid dehalogenase.
 
  
  0.823
GWL_33030
Glutamate synthase large subunit oxidoreductase.
  
 
 0.818
GWL_18630
Haloacid dehalogenase-like hydrolase protein.
 
  
  0.807
GWL_04960
Family II aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.796
GWL_45110
Hypothetical protein.
 
 
  0.783
GWL_44030
GabT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.771
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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