Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
GWL_44200Beta-galactosidase. (641 aa)    
Predicted Functional Partners:
GWL_38540
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.909
GWL_44190
Sugar ABC transporter periplasmic protein.
 
  
 0.887
GWL_21700
D-galactose-1-dehydrogenase.
  
 
  0.885
GWL_03920
Galactose-1-epimerase.
  
 
 0.836
GWL_20640
Ankyrin repeat-containing signal peptide protein.
   
 0.802
GWL_04050
Gluconolactonase.
 
  
  0.760
GWL_44170
Sugar ABC transporter permease.
 
    0.727
GWL_32620
Gluconolactonase.
    
  0.720
GWL_11210
Gluconolactonase.
    
  0.712
GWL_18300
Hypothetical protein.
    
  0.712
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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