Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_442705-carboxymethyl-2-hydroxymuconate delta-isomerase. (119 aa)    
Predicted Functional Partners:
GWL_06840
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase.
  
 
 0.883
GWL_29330
Hypothetical protein.
  
 
 0.614
GWL_17900
CnbE.
  
 
 0.608
GWL_17910
cnbF.
  
 
 0.608
GWL_18000
TdnG.
  
 
 0.608
GWL_21340
2-keto-4-pentenoate hydratase.
  
 
 0.608
GWL_45810
4-oxalocrotonate decarboxylase.
  
 
 0.608
GWL_27620
2-keto-4-pentenoate hydratase.
  
 
 0.606
GWL_44660
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.599
GWL_21700
D-galactose-1-dehydrogenase.
     
  0.573
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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