Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_44530Hypothetical protein. (1358 aa)    
Predicted Functional Partners:
GWL_44520
Hemolysin activation/secretion protein.
 
   
 0.939
GWL_25310
Serine endopeptidase.
  
 0.782
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
 0.774
GWL_44540
Hypothetical protein.
 
  
  0.774
GWL_14270
Hypothetical protein.
  
 0.721
GWL_38670
Autotransporter adhesin protein.
  
 0.721
GWL_41400
Hypothetical protein.
  
 0.721
GWL_10710
FKBP-type peptidyl-prolyl cis-trans isomerase.
    
 0.670
GWL_24400
Outer membrane hemin/siderophore receptor protein.
  
 
 
 0.664
GWL_14190
Periplasmic polysaccharide export protein.
     
 0.652
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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