Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_45380Hypothetical protein. (99 aa)    
Predicted Functional Partners:
GWL_45370
ABC transporter permease.
  
    0.896
GWL_45390
anhydro-N-acetylmuramyl-tripeptide amidase.
       0.836
ribB
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.755
GWL_07130
Electron transfer component of chlorobenzoate 1,2-dioxygenase.
    
 0.730
GWL_27360
Chaperone activity ATPase.
    
 0.730
GWL_30180
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
    
 0.730
GWL_04350
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
    
 0.664
GWL_07260
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein.
    
 0.656
GWL_33740
Vanillate O-demethylase (vanillate degradation ferredoxin-like) oxidoreductase.
    
 0.656
GWL_35480
Phenylacetic acid degradation NADH oxidoreductase.
    
 0.656
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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