Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (365 aa)    
Predicted Functional Partners:
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 0.999
GWL_14170
Glucosyltransferase involved in lipopolysaccharide synthesis protein.
  
  
 0.980
GWL_14310
GDP-mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.980
GWL_46340
Hypothetical protein.
 
 
 0.882
GWL_30500
UDP-glucose 6-dehydrogenase.
  
 
 0.845
GWL_38020
NAD-dependent epimerase; dehydratase:Short-chain dehydrogenase/reductase SDR:3-beta hydroxysteroid dehydrogenase/isomerase:Polysaccharide biosynthesis protein CapD:dTDP-4-dehydrorhamnose reductase.
  
  
 0.816
GWL_46490
Putative aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
    
 0.759
GWL_02130
Nucleoside-diphosphate-sugar pyrophosphorylase subunits gamma/epsilon.
    
 0.739
GWL_06290
Nucleotidyl transferase.
    
 0.739
GWL_14300
Mannose-1-phosphate guanylyltransferase.
    
 0.739
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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