STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDJ99487.1Regulatory protein LacI. (367 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
    
 
 0.808
CDJ99486.1
Putative sugar ABC transporter,substrate-binding protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.731
ptsH
Phosphocarrier protein HPr.
   
 
 0.709
ribBA
Riboflavin biosynthesis protein RibBA (Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
   0.692
CDJ99478.1
Thioredoxin reductase.
    
 
 0.628
guaA
GMP synthetase (glutamine aminotransferase); Catalyzes the synthesis of GMP from XMP.
    
   0.581
CDK00333.1
Uncharacterized oxidoreductase MSMEG_1603/MSMEI_1564.
    
   0.529
CDK00356.1
2-oxoisovalerate dehydrogenase subunit beta.
    
   0.523
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
  0.488
pdxT
Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
   
  0.486
Your Current Organism:
Microbacterium sp. C448
NCBI taxonomy Id: 1177594
Other names: M. sp. C448
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