STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yohFPutative oxidoreductase with NAD(P)-binding Rossmann-fold domain; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. (264 aa)    
Predicted Functional Partners:
fabF
3-oxoacyl-(acyl-carrier-protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.787
fabD
Malonyl CoA-acyl carrier protein transacylase.
  0.770
gltB
Glutamate synthase, large subunit; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
     
 0.760
fadB
3-hydroxyacyl-CoA dehydrogenase.
  
 0.648
sbcD
DNA repair exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
   0.647
CDK00352.1
Alpha-L-rhamnosidase.
   
   0.597
fabH
3-oxoacyl-(acyl-carrier-protein) synthase 3; Belongs to the thiolase-like superfamily. FabH family.
 
 
 0.586
CDJ99395.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
    
  0.582
CDK01244.1
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.572
CDK00183.1
Putative delta fatty acid desaturase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.563
Your Current Organism:
Microbacterium sp. C448
NCBI taxonomy Id: 1177594
Other names: M. sp. C448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.