STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI32010.1TonB-linked outer membrane protein, SusC/RagA family. (1043 aa)    
Predicted Functional Partners:
SHI31987.1
Starch-binding associating with outer membrane.
 
 
   0.982
SHI31951.1
Starch-binding associating with outer membrane.
 
 
   0.968
SHI32076.1
Starch-binding associating with outer membrane.
 
 
 
 0.884
SHI31933.1
Protein of unknown function.
 
     0.878
SHI31311.1
Starch-binding associating with outer membrane.
 
 
 
 0.820
SHI31972.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
 
0.761
SHI31399.1
Xylan 1,4-beta-xylosidase.
  
     0.721
SHI80747.1
Starch-binding associating with outer membrane.
 
 
 
 0.714
SHI31289.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.703
SHI31707.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
 
     0.688
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.