STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI33526.1Outer membrane protein beta-barrel domain-containing protein. (192 aa)    
Predicted Functional Partners:
SHI33480.1
Hypothetical protein.
 
    0.836
SHI33501.1
Hypothetical protein.
 
     0.825
SHI33457.1
Hypothetical protein.
 
    0.774
SHI33547.1
Hypothetical protein.
       0.535
SHI33387.1
Outer membrane receptor for ferrienterochelin and colicins.
 
     0.532
SHI33401.1
FecR family protein.
 
     0.499
SHI70734.1
Periplasmic chaperone for outer membrane proteins Skp.
    
   0.483
SHI91371.1
Periplasmic chaperone for outer membrane proteins Skp.
    
   0.483
SHI91391.1
Periplasmic chaperone for outer membrane proteins Skp.
    
   0.483
secA
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
    
 
 0.480
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.