STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI55966.1Isopentenyldiphosphate isomerase. (185 aa)    
Predicted Functional Partners:
SHI37202.1
Diphosphomevalonate decarboxylase.
  
 
 0.906
SHI60979.1
Isopentenyl-diphosphate delta-isomerase.
  
  
 
0.891
SHI76177.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
 
 0.866
SHI55992.1
Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family.
       0.773
SHJ00415.1
Phytoene/squalene synthetase.
 
 
 0.643
SHI55942.1
Putative aminopeptidase FrvX.
       0.554
SHI56007.1
Biotin carboxyl carrier protein.
       0.536
SHI56029.1
propionyl-CoA carboxylase alpha chain; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.536
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
  
 0.534
SHI56053.1
propionyl-CoA carboxylase beta chain.
       0.443
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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