STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI56569.1TfoX N-terminal domain-containing protein. (120 aa)    
Predicted Functional Partners:
SHI56540.1
Protein of unknown function.
       0.773
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
   0.705
SHI56592.1
Outer membrane receptor for ferrienterochelin and colicins.
       0.610
hisI
phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
    
  0.561
SHI56526.1
Alanine or glycine:cation symporter, AGCS family.
       0.549
SHI56609.1
Carbonic anhydrase.
 
     0.497
hisA
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase.
    
  0.460
SHI53759.1
Hypothetical protein.
  
     0.425
SHI29870.1
Putative lumazine-binding.
 
     0.419
SHI56502.1
Putative ATPase subunit of terminase (gpP-like).
       0.404
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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