STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI73866.1Tetratricopeptide repeat-containing protein. (252 aa)    
Predicted Functional Partners:
SHI73844.1
Oxygen tolerance.
     0.995
SHI73822.1
Tetratricopeptide repeat-containing protein.
 
   0.906
SHI73804.1
Ca-activated chloride channel family protein.
 
     0.864
SHI73734.1
Protein of unknown function DUF58.
 
    0.851
SHI73753.1
Hypothetical protein.
 
     0.847
SHI73777.1
Ca-activated chloride channel family protein.
 
     0.838
SHI39858.1
Hypothetical protein.
  
     0.617
SHI73890.1
Hypothetical protein.
       0.590
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.581
SHI30045.1
Outer membrane transport energization protein TonB.
  
     0.451
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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