STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI76797.1Outer membrane protein beta-barrel domain-containing protein. (230 aa)    
Predicted Functional Partners:
SHI60891.1
Protein of unknown function.
  
     0.771
SHJ08783.1
Hypothetical protein.
  
     0.761
SHI87469.1
Hypothetical protein.
  
     0.759
SHI76625.1
Aspartyl protease.
 
     0.752
SHI28893.1
CarboxypepD_reg-like domain-containing protein.
  
     0.748
SHI73672.1
Putative DNA-binding domain-containing protein.
  
     0.748
SHI82060.1
Hypothetical protein.
  
     0.739
SHI49269.1
Putative MetA-pathway of phenol degradation.
  
     0.734
SHI55278.1
Hypothetical protein.
  
     0.732
SHI69831.1
Hypothetical protein.
  
     0.718
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.