STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI80845.1MFS transporter, ACS family, hexuronate transporter. (429 aa)    
Predicted Functional Partners:
SHI80859.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.894
SHI80821.1
Transcriptional regulator, GntR family.
 
   
 0.884
SHI80805.1
Alginate lyase.
 
     0.829
SHI80690.1
Alginate lyase.
 
    0.819
SHI80672.1
poly(beta-D-mannuronate) lyase.
 
    0.796
SHI80705.1
Cupin domain-containing protein.
 
     0.769
SHI29432.1
poly(beta-D-mannuronate) lyase.
 
    0.764
SHI80728.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.667
SHI84507.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.599
SHI32458.1
Alginate lyase.
  
     0.578
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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