STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ14374.1Protocatechuate 3,4-dioxygenase beta subunit. (200 aa)    
Predicted Functional Partners:
SHI52086.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.647
SHJ14393.1
Protein of unknown function.
 
     0.588
SHI52116.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.571
SHI41980.1
Hypothetical protein.
  
     0.556
SHI52165.1
Hypothetical protein.
  
     0.522
SHI52136.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.512
SHI59045.1
O-Antigen ligase.
  
     0.496
SHI69700.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.485
SHJ03170.1
YceI-like domain-containing protein.
  
     0.465
SHJ02913.1
Protein of unknown function.
  
     0.433
Your Current Organism:
Arenitalea lutea
NCBI taxonomy Id: 1178825
Other names: A. lutea, Arenitalea lutea Zhang et al. 2013, CGMCC 1.12213, Flavobacteriaceae bacterium P7-3-5, KACC 16457, strain P7-3-5
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