STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCBB_0345Putative protein MJ0319; sp|Q57767|Y319_METJA;evalue=4e-030; PctID=67.74; score=129. (96 aa)    
Predicted Functional Partners:
MCBB_1595
Putative protein MJ0645; sp|Q58061|Y645_METJA;evalue=1e-016; PctID=28.57; score=86.3.
 
     0.758
hpsA
3-hexulose-6-phosphate synthase; Catalyzes the condensation of ribulose 5-phosphate with formaldehyde to form 3-hexulose 6-phosphate. 5-phosphate + formaldehyde; sp|Q46DA4|HPS_METBF;evalue=3e-035; PctID=38.14; score=148.
 
     0.614
MCBB_1888
Putative HTH-type transcriptional regulatory protein MTH_967; sp|O27048|Y967_METTH;evalue=3e-091; PctID=54.21; score=335; {ECO:0000255|HAMAP-Rule:MF_00584}.
  
     0.543
MCBB_2204
UPF0215 protein; sp|O27371|Y1316_METTH;evalue=5e-070; PctID=63.59; score=263; Belongs to the UPF0215 family.
  
     0.500
MCBB_0348
Putative lon protease homolog; sp|O26978|LONH_METTH;evalue=0.0; PctID=75.75; score=791.
 
     0.474
rpl39e
50S ribosomal protein L39e; sp|O27650|RL39_METTH;evalue=7e-009; PctID=54.00; score=59.3; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.465
MCBB_0343
UPF0104 membrane protein; sp|O26973|Y887_METTH;evalue=5e-083; PctID=50.00; score=308.
       0.442
Gtpbp1
GTP-binding protein 1; Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity. HNRNPD, HNRNPR and SYNCRIP. Identified in a complex with HNRNPD, HNRNPL, HNRNPQ,HNRNPR, HNRNPU and AANAT mRNA, but does not bind mRNA by itself. superfamily. Classic translation factor GTPase family. GTPBP1 subfamily. domain; sp|D2XV59|GTPB1_RAT;evalue=1e-062; PctID=31.29; score=241.
 
     0.420
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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