STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCBB_0513Cupin 2 conserved barrel domain protein; tr|F6D4Q4|F6D4Q4_METPW;evalue=1e-070; PctID=70.90; score=271; {ECO:0000313|EMBL:AEG17539,1}. (191 aa)    
Predicted Functional Partners:
MCBB_0514
Thioesterase superfamily protein; tr|F6D4Q5|F6D4Q5_METPW;evalue=6e-071; PctID=89.44; score=272; {ECO:0000313|EMBL:AEG17540,1}.
  
  
 0.690
yngI
Putative acyl-CoA synthetase YngI; sp|O31826|YNGI_BACSU;evalue=4e-167; PctID=52.16; score=588.
 
  
 0.634
Acsm3
Acyl-coenzyme A synthetase ACSM3, mitochondrial; Has medium-chain fatty acid:CoA ligase activity with broad substrate specificity (in vitro). Acts on acids from C(4) to C(11) and on the corresponding 3-hydroxy-and 2,3-or 3,4-unsaturated acids (in vitro). + an acyl-CoA. Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence=; Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Event=Alternative splicing; Named isoforms=2; Name=1; IsoId=Q3UNX5-1; Name=2; IsoId=Q3UNX5-2; Sequence=VSP_028397; Note=No experimental confirmation available; Detected in kidney proximal tubules and in liver. Detected at low [...]
 
 
 0.402
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.