STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCBB_0805Putative protein MJ0037; sp|Q60344|Y037_METJA;evalue=1e-028; PctID=32.90; score=126. (247 aa)    
Predicted Functional Partners:
MCBB_0806
Putative ATP-dependent helicase MTH_1802; sp|O27830|HELX_METTH;evalue=0.0; PctID=74.07; score=1267.
 
    0.904
lig
DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
   
 0.629
MCBB_0865
Putative ATP-dependent RNA helicase DDX55 homolog; Probable ATP-binding RNA helicase. box family of RNA helicases and controls ATP binding and hydrolysis. subfamily; sp|Q61R02|DDX55_CAEBR;evalue=8e-019; PctID=24.13; score=96.3.
 
    0.533
MCBB_2214
Putative protein MJ0038; sp|Q60345|Y038_METJA;evalue=9e-044; PctID=50.27; score=176.
  
     0.529
MCBB_2189
Putative protein MJ0106; sp|Q57570|Y106_METJA;evalue=2e-026; PctID=31.72; score=119.
  
     0.504
dnaG
DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.493
cdc6-1
ORC1-type DNA replication protein 1; Involved in regulation of DNA replication.
  
     0.445
MCBB_2327
UPF0147 protein; sp|O27458|Y1407_METTH;evalue=5e-030; PctID=74.70; score=129; Belongs to the UPF0147 family.
  
     0.407
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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