STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCBB_1071Putative protein; tr|F6D3Q2|F6D3Q2_METPW;evalue=1e-059; PctID=92.56; score=234; {ECO:0000313|EMBL:AEG18046,1}. (131 aa)    
Predicted Functional Partners:
MCBB_0314
Putative protein; Involved in DNA damage repair.
 
     0.681
cdc6-2
ORC1-type DNA replication protein 2; Involved in regulation of DNA replication.
  
     0.629
MCBB_1074
Putative protein MJ1601; sp|Q58996|Y1601_METJA;evalue=8e-020; PctID=35.40; score=96.3.
 
     0.610
rpoL
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. + RNA(n+1). RNA polymerase subunit family; sp|O27372|RPOL_METTH;evalue=4e-020; PctID=54.76; score=96.7.
  
     0.515
MCBB_1863
Putative protein MJ1079; sp|Q58479|Y1079_METJA;evalue=3e-015; PctID=33.77; score=83.6.
  
     0.472
rnp4
Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
  
     0.466
uvrD1
Putative DNA helicase II homolog; Has both ATPase and helicase activities. Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present. Involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair (By similarity); sp|P45612|UVRD_MYCCT;evalue=4e-011; PctID=44.94; score=70.1.
  
     0.464
MCBB_1072
Putative asparagine synthetase [glutamine-hydrolyzing] 1; sp|Q58516|ASNH1_METJA;evalue=5e-060; PctID=44.44; score=232.
       0.463
MCBB_0518
Putative protein MJ1432; sp|Q58827|Y1432_METJA;evalue=6e-033; PctID=52.27; score=139.
  
     0.444
cdc6-1
ORC1-type DNA replication protein 1; Involved in regulation of DNA replication.
  
     0.431
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.