STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCBB_1093Putative aminopeptidase MJ0555; sp|Q57975|Y555_METJA;evalue=2e-112; PctID=58.72; score=405. (342 aa)    
Predicted Functional Partners:
MCBB_1072
Putative asparagine synthetase [glutamine-hydrolyzing] 1; sp|Q58516|ASNH1_METJA;evalue=5e-060; PctID=44.44; score=232.
  
  
 0.586
MCBB_1468
Putative aspartate aminotransferase; sp|Q60317|AAT_METJA;evalue=8e-093; PctID=47.59; score=340.
  
 
 0.556
dapL
LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.
  
 
 0.545
pepQ
Xaa-Pro dipeptidase; Splits dipeptides with a prolyl in the C-terminal position and a nonpolar amino acid at the N-terminal position. on aminoacyl-hydroxyproline analogs. No action on Pro-|-Pro. Name=Co(2+); Xref=ChEBI:CHEBI:48828; Evidence=; Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Note=Binds 2 cobalt ions per subunit. Co(2+) can be replaced by Mn(2+), resulting in a 25% decrease in activity, but not by Mg(2+), Ca(2+), Fe(2+), Zn(2+), Cu(2+), or Ni(2+); Kinetic parameters: KM=2.8 mM for Met-Pro; KM=3 mM for Leu-Pro; KM=4.2 mM for Val-Pro; KM=8.3 mM for Ala-Pro; KM=20 mM for Phe [...]
 
  
 0.509
MCBB_1092
Putative protein; tr|F6D3T1|F6D3T1_METPW;evalue=8e-015; PctID=64.15; score=85.5; {ECO:0000313|EMBL:AEG18075,1}.
       0.464
yrdC
Putative isochorismatase family protein YrdC; sp|O07081|YRDC_BACSU;evalue=1e-019; PctID=31.32; score=96.3.
       0.428
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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